Software

R Packages

einet: Effective Information and Causal Emergence. Paper.

multiDimBio: An R Package for the Design, Analysis, and Visualization of Systems Biology Experiments. Paper.

binequality: An R Package for Performing Multimodel Estimation of Inequality from Binned Incomes. Paper.

Emergent Epidemics Lab GitHub Repositories

Emergent Epidemics Lab. Scarpino

Moderator Buster

R code and data. Shiny app.

Code for infection trees

R code to work with infection trees. Specifically, this removes non-bifurcating internal nodes, which will prevent you from using the phylogenetic tools in R.

Code to plot infection trees using graphviz. Written by Ruben Andrist.