Preprints

Preprints (not published elsewhere)

Deterministic Construction of Typical Networks in Network Models (with Sabhahit NG, Laber M, Hartle H, van der Kolk J, Klein B, and Kriokov D)

Computational Frame Analysis Revisited: On LLMs for Studying News Coverage (with Kunjar S, Hasegawa Smith A, Mckenzie TR, Mohbe R, and Foucault Welles B)

The Role of Climate Change in the Expansion of Dengue (with de Abreu R, Perez Fernandez I, Mishra S, Gutierrez B, Inward RPD, Mills C, Lopez Ortiz E, Bastos LS, Picinini Freitas L, Carvalho LM, Flaxman S, Bhatt S, Coelho FC, Reiner RC, Sambaturu P, Tegally H, Cauchemez S, Gonçalves Cruz O, Munayco CV, Alberto Díaz-Quiñonez J, Mitchell D, Lott F, Dominici F, Pybus OG, Torres Codeço C, Castro MC, Kraemer MUG, and Sparrow S).

Hypergraph Representations of scRNA-seq Data for Improved Clustering with Random Walks (with He W, Bolnick DI, and Eliassi-Rad T).

A Misclassification Network-Based Method for Comparative Genomic Analysis. (with He W and Eliassi-Rad T).

Rates of evolution differ between cell types identified by single-cell RNAseq in threespine stickleback. (with Rodgers ML, Subramanian S, Fuess LE., He W, Roth-Monzon A, Jeffries D, Seignon M, Milligan-McClellan K, Carrier R, Steinel NC and Bolnick D).

Structural causal influence (SCI) captures the forces of social inequality in models of disease dynamics. (with Surasinghe S, Manivannan SN, Crawford L, and Ogbunugafor CB).

Early risk-assessment of pathogen genomic variants emergence (with Susswein Z, Johnson KE, Kassa R, Parastaran M, Peng V, Wolansky L, and Bento AI).

Reproductive Barriers as a Byproduct of Gene Network Evolution (with Yang CH).

Preliminary estimates of the international spreading risk associated with the SARS-CoV-2 VUI 202012/01 (with Chinazzi M, Davis JT, MU K, Pastore y Piontti A, Perra N, and Vespignani A).

Assessing changes in commuting and individual mobility in major metropolitan areas in the United States during the COVID-19 outbreak. (with Klein B, LaRock T, McCabe S, Torres L, Privitera F, Lake B, Kraemer MUG, Brownstein JS, Lazer D, Eliassi-Rad T, Chinazzi M, and Vespignani A).

Google searches accurately forecast RSV hospitalizations. (with Althouse BM, Weinberger DM, Pitzer VE, Ayers JW, Wenger W, Chun-Hai Fung I, Dredze M, and Hu H).

Analysis of clinical Bordetella pertussis isolates using whole genome sequences reveals novel genomic regions associated with recent outbreaks in the United States. (with Otero G and Althouse BM).

The Moose of Isle Royale: An Unnatural Condition? (with Guerrero RF and Scarpino PV).

multiDimBio: An R package for the design, analysis, and visualization of systems biology experiments. (with Crews D and Gillette R).