Samuel Scarpino bio photo

Samuel Scarpino

Assistant Professor in the Network Science Institute at Northeastern University.

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Software

R Libraries

multiDimBio: An R Package for the Design, Analysis, and Visualization of Systems Biology Experiments. Paper.

binequality: An R Package for Performing Multimodel Estimation of Inequality from Binned Incomes. Paper.

Code for gene expression network analysis

R code and data. Please see our preprint for more information and please cite us if you use the code.

Code for infection trees

R code to work with infection trees. Specifically, this removes non-bifurcating internal nodes, which will prevent you from using the phylogenetic tools in R.

Code to plot infection trees using graphviz. Written by Ruben Andrist.

PCA Examples

PCA examples.